Main Page

For further informations, please contact :

GIGA	UDI Med
GIGA +1, Room 1/11A-B laurent.fournier@uliege.be Work: +32 4 366 34 53 Mobile: +32 497 87 96 46	CHU +0 udi.med@uliege.be +32 4 366 99 66 Requests form
Science apps Linux support MassStorage + grids support Taping system (Backups)	Office apps Win/Mac support Network (LAN, VPN) VirtualMachines

And, of course, you still got the ULg Intranet for all administrative requests and the GIGA Intranet providing much more informations.

What we got so far


This Wiki - Information board	About
OpenAtrium - A Project Manager for Usergroups, tasks and logistics management	About	Howto
Galaxy - A bioinformatics research platform	About	Howto
Cytomine - A collaborative imaging analysis platform	About	Howto
RStudio - A web IDE for R	About	Howto
GitLab - A versioning platform	About	Howto

Grid-based tools

**How to use those**
5.3.1	bowtie/2.3.3.1	elprep/2.61	gnuplot/5.0.6	lapack/gcc/64/3.5.0	perl/time-piece/1.31	scala/2.12.0
bam-readcount/1	bwa/0.7.15	elprep/3.0	go/1.9	mothur/1.39.1	picard-tools/1.78	seqff/1
basespace-invaders/1.0.0	bwa/0.7.16a	elprep/3.01	hdf5/1.6.10	nanonet/1	picard-tools/2.7.1	singularity/2.2.1
basespace-python/1.0.0	bwa/0.7.5a	emboss/6.6.0	hdf5_18/1.8.14	ncbi/eutils/2016-11-22	puppet/3.7.5	slurm/14.11.11
bcftools/1.3.1	canu/1.4	ensembl-tools/86	homer/4.9	netperf/2.6.0	R/3.2.2	snpeff/4
bcl2fastq/2.17	cellranger/1.3.1	excelcompare/0.6.1	hpl/2.1	openblas/dynamic/0.2.14	R/3.2.4	star/2.5.2b
beagle/21jan17	cmgui/7.1	fastqc/0.11.5	htseq/0.6.1p1	openlava/3.0	rdp-classifier/2.6	sun-jre/7
beagle/3.3.2	crispresso/1	fastx_toolkit/0.0.13	htslib/1.3.2	openmpi/gcc/64/1.8.5	rdptools/1	tabix/0.2.6
bedtools/2.17.0	cufflinks/2.2.1	flash/1.2.11	igvtools/2.3.78	pandoc/1.16.0.2	rmats/3.2.5	tophat/2.1.1
blas/gcc/64/3.5.0	cutadapt/1.11	gatk/3.1.1	iozone/3_430	penncnv/1.0.3	sambamba/0.6.6	ucsc/utils/v432
blast/2.5.0+	default-environment	gatk/3.6	iozone/3_471	perl/5.16.3	samstat/1.5.1	vcfsorter/1
blat/35	dos2unix/7.1	gdb/7.9	java/7.0.25	perl/5.24.1	samtools/0.1.19	vcftools/1
bonnie++/1.97.1	EasyBuild	genomicsimla/1.1.3	java/8.0.111	perl/config-simple/4.59	samtools/1.3.1	vep/90
bowtie/1.1.2	ea-utils/27	GNUparallel/20160822	jdk/jdk1.8.0_66	perl/test-simple/1,001014	samtools/1.6	zlib/1.2.8