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For further informations, please contact :

GIGA	UDI Med
GIGA +1, Room 1/11A-B laurent.fournier@uliege.be Work: +32 4 366 34 53 Mobile: +32 497 87 96 46	CHU +0 udi.med@uliege.be +32 4 366 99 66 Requests form
Linux support & management MassStorage + grids's support & management Taping system (backup) Support & installs grid Linux-based	Desk Support & management Network (LAN, VPN) VPS Support & installs office Windows/Mac-based

And, of course, you still got the ULg Intranet for all administrative requests and the GIGA Intranet providing much more informations.

What we got right now

Web-based tools


This Wiki - Information board	About
OpenAtrium - A Project Manager for Usergroups, tasks and logistics management	About	Howto
Galaxy - A bioinformatics research platform	About	Howto
Cytomine - A collaborative imaging analysis platform	About	Howto
RStudio - A web IDE for R	About	Howto
GitLab - A versioning platform	About	Howto

Grid-based tools

u227664@master01:~$ module avail

----------------------------------------------------------------------- /cm/shared/modulefiles ------------------------------------------------------------------------
5.3.1                     bowtie/2.3.3.1            elprep/2.61               gnuplot/5.0.6             lapack/gcc/64/3.5.0       perl/time-piece/1.31      scala/2.12.0
bam-readcount/1           bwa/0.7.15                elprep/3.0                go/1.9                    mothur/1.39.1             picard-tools/1.78         seqff/1
basespace-invaders/1.0.0  bwa/0.7.16a               elprep/3.01               hdf5/1.6.10               nanonet/1                 picard-tools/2.7.1        singularity/2.2.1
basespace-python/1.0.0    bwa/0.7.5a                emboss/6.6.0              hdf5_18/1.8.14            ncbi/eutils/2016-11-22    puppet/3.7.5              slurm/14.11.11
bcftools/1.3.1            canu/1.4                  ensembl-tools/86          homer/4.9                 netperf/2.6.0             R/3.2.2                   snpeff/4
bcl2fastq/2.17            cellranger/1.3.1          excelcompare/0.6.1        hpl/2.1                   openblas/dynamic/0.2.14   R/3.2.4                   star/2.5.2b
beagle/21jan17            cmgui/7.1                 fastqc/0.11.5             htseq/0.6.1p1             openlava/3.0              rdp-classifier/2.6        sun-jre/7
beagle/3.3.2              crispresso/1              fastx_toolkit/0.0.13      htslib/1.3.2              openmpi/gcc/64/1.8.5      rdptools/1                tabix/0.2.6
bedtools/2.17.0           cufflinks/2.2.1           flash/1.2.11              igvtools/2.3.78           pandoc/1.16.0.2           rmats/3.2.5               tophat/2.1.1
blas/gcc/64/3.5.0         cutadapt/1.11             gatk/3.1.1                iozone/3_430              penncnv/1.0.3             sambamba/0.6.6            ucsc/utils/v432
blast/2.5.0+              default-environment       gatk/3.6                  iozone/3_471              perl/5.16.3               samstat/1.5.1             vcfsorter/1
blat/35                   dos2unix/7.1              gdb/7.9                   java/7.0.25               perl/5.24.1               samtools/0.1.19           vcftools/1
bonnie++/1.97.1           EasyBuild                 genomicsimla/1.1.3        java/8.0.111              perl/config-simple/4.59   samtools/1.3.1            vep/90
bowtie/1.1.2              ea-utils/27               GNUparallel/20160822      jdk/jdk1.8.0_66           perl/test-simple/1,001014 samtools/1.6              zlib/1.2.8

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