Main Page

For further informations, please contact :

GIGA	UDI Med
GIGA +1, Room 1/11A-B laurent.fournier@uliege.be Work: +32 4 366 34 53 Mobile: +32 497 87 96 46	CHU +0 udi.med@uliege.be +32 4 366 99 66 Requests form
Scientific apps Linux support Mass Storage & Grid_computing support Taping system (Backups)	Office apps Win/Mac support Network (LAN, VPN) VM creation & support

And, of course, you still got the ULg Intranet for all administrative requests and the GIGA Intranet providing much more informations.

What we got so far

Web-based tools

This Wiki - Information board	About
OpenAtrium - A Project Manager for Usergroups, tasks and logistics management	About	Howto
Galaxy - A bioinformatics research platform	About	Howto
Cytomine - A collaborative imaging analysis platform	About	Howto
RStudio - A web IDE for R	About	Howto
GitLab - A versioning platform	About	Howto

Grid-based tools

How to use those

5.3.1	bowtie/2.3.3.1	elprep/2.61	gnuplot/5.0.6	lapack/gcc/64/3.5.0	perl/time-piece/1.31	scala/2.12.0
bam-readcount/1	bwa/0.7.15	elprep/3.0	go/1.9	mothur/1.39.1	picard-tools/1.78	seqff/1
basespace-invaders/1.0.0	bwa/0.7.16a	elprep/3.01	hdf5/1.6.10	nanonet/1	picard-tools/2.7.1	singularity/2.2.1
basespace-python/1.0.0	bwa/0.7.5a	emboss/6.6.0	hdf5_18/1.8.14	ncbi/eutils/2016-11-22	puppet/3.7.5	slurm/14.11.11
bcftools/1.3.1	canu/1.4	ensembl-tools/86	homer/4.9	netperf/2.6.0	R/3.2.2	snpeff/4
bcl2fastq/2.17	cellranger/1.3.1	excelcompare/0.6.1	hpl/2.1	openblas/dynamic/0.2.14	R/3.2.4	star/2.5.2b
beagle/21jan17	cmgui/7.1	fastqc/0.11.5	htseq/0.6.1p1	openlava/3.0	rdp-classifier/2.6	sun-jre/7
beagle/3.3.2	crispresso/1	fastx_toolkit/0.0.13	htslib/1.3.2	openmpi/gcc/64/1.8.5	rdptools/1	tabix/0.2.6
bedtools/2.17.0	cufflinks/2.2.1	flash/1.2.11	igvtools/2.3.78	pandoc/1.16.0.2	rmats/3.2.5	tophat/2.1.1
blas/gcc/64/3.5.0	cutadapt/1.11	gatk/3.1.1	iozone/3_430	penncnv/1.0.3	sambamba/0.6.6	ucsc/utils/v432
blast/2.5.0+	default-environment	gatk/3.6	iozone/3_471	perl/5.16.3	samstat/1.5.1	vcfsorter/1
blat/35	dos2unix/7.1	gdb/7.9	java/7.0.25	perl/5.24.1	samtools/0.1.19	vcftools/1
bonnie++/1.97.1	EasyBuild	genomicsimla/1.1.3	java/8.0.111	perl/config-simple/4.59	samtools/1.3.1	vep/90
bowtie/1.1.2	ea-utils/27	GNUparallel/20160822	jdk/jdk1.8.0_66	perl/test-simple/1,001014	samtools/1.6	zlib/1.2.8