Page
6 years, 326 days, 23 hours and 48 minutes - Benoit Charloteaux

Difference between revisions of "Main Page"
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__NOTOC__
 
__NOTOC__
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<center>
 
<center>
 
'''For further informations, please contact :'''
 
'''For further informations, please contact :'''
 
{| class="wikitable"
 
{| class="wikitable"
 
|-
 
|-
−
!|GIGA
+
!|GIGA||UDI Med
−
||UDI Med
 
 
|-
 
|-
 
||''GIGA +1, Room 1/11A-B''<br />
 
||''GIGA +1, Room 1/11A-B''<br />
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''Work: +32 4 366 34 53''<br />
 
''Work: +32 4 366 34 53''<br />
 
''Mobile: +32 497 87 96 46''
 
''Mobile: +32 497 87 96 46''
−
 
 
||''CHU +0''<br />
 
||''CHU +0''<br />
 
[mailto:udi.med@uliege.be ''udi.med@uliege.be'']<br />
 
[mailto:udi.med@uliege.be ''udi.med@uliege.be'']<br />
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* Taping system (backup)
 
* Taping system (backup)
 
* Support & installs grid Linux-based
 
* Support & installs grid Linux-based
−
 
 
||
 
||
 
* Desk Support & management
 
* Desk Support & management
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* VPS
 
* VPS
 
* Support & installs office Windows/Mac-based
 
* Support & installs office Windows/Mac-based
 +
|}
 +
 +
And, of course, you still got the [https://my.uliege.be/portail/index.do '''ULg Intranet'''] for all administrative requests and the [http://www.giga.uliege.be/cms/c_8725/fr/portail-intranet-accueil '''GIGA Intranet'''] providing much more informations.</center>
  
−
|}And, of course, you still got the [https://my.uliege.be/portail/index.do '''ULg Intranet'''] for all administrative requests and the [http://www.giga.uliege.be/cms/c_8725/fr/portail-intranet-accueil '''GIGA Intranet'''] providing much more informations.
 
  
−
</center>
 
  
  
 
==What we got right now==
 
==What we got right now==
 +
===[[World_Wide_Web|Web]]-based tools===
 +
<center>
 
{| style="width: 70%;"
 
{| style="width: 70%;"
 +
| colspan="2" |
 
|-
 
|-
−
| colspan="2"| 
+
| [http://damona.giga.ulg.ac.be/wiki/ This Wiki - Information board] || colspan="1" | [[Wiki|'''<span style="color:#4169E1">About</span>''']] ||  
−
|-
 
−
||[http://damona.giga.ulg.ac.be/wiki/ This Wiki - Information board]
 
−
| colspan="1"|[[Wiki|'''<span style="color: #4169e1;">About</span>''']]
 
−
||
 
 
|-
 
|-
−
||[http://damona.giga.ulg.ac.be/openatrium/ OpenAtrium - A Project Manager for Usergroups, tasks and logistics management]
+
| [http://damona.giga.ulg.ac.be/openatrium/ OpenAtrium - A Project Manager for Usergroups, tasks and logistics management] || colspan="1" | [[OA|'''<span style="color:#4169E1">About</span>''']] || colspan="1" | [[OA:Use|'''<span style="color:#4F94CD">Howto</span>''']]
−
| colspan="1"|[[OA|'''<span style="color: #4169e1;">About</span>''']]
 
−
| colspan="1"|[[OA:Use|'''<span style="color: #4f94cd;">Howto</span>''']]
 
 
|-
 
|-
−
||[http://galaxy.giga.ulg.ac.be:8080 Galaxy - A bioinformatics research platform]
+
| [http://galaxy.giga.ulg.ac.be:8080 Galaxy - A bioinformatics research platform] || colspan="1" | [[Galaxy|'''<span style="color:#4169E1">About</span>''']] || colspan="1" | [[Galaxy:Use|'''<span style="color:#4F94CD">Howto</span>''']]
−
| colspan="1"|[[Galaxy|'''<span style="color: #4169e1;">About</span>''']]
 
−
| colspan="1"|[[Galaxy:Use|'''<span style="color: #4f94cd;">Howto</span>''']]
 
 
|-
 
|-
−
||[http://cytomine.giga.ulg.ac.be Cytomine - A collaborative imaging analysis platform]
+
| [http://cytomine.giga.ulg.ac.be Cytomine - A collaborative imaging analysis platform] || colspan="1" | [[Cytomine|'''<span style="color:#4169E1">About</span>''']] || colspan="1" | [[Cytomine:Use|'''<span style="color:#4F94CD">Howto</span>''']]
−
| colspan="1"|[[Cytomine|'''<span style="color: #4169e1;">About</span>''']]
 
−
| colspan="1"|[[Cytomine:Use|'''<span style="color: #4f94cd;">Howto</span>''']]
 
 
|-
 
|-
−
||[http://rstudio.giga.ulg.ac.be/ RStudio - A web IDE for R]
+
| [http://rstudio.giga.ulg.ac.be/ RStudio - A web IDE for R] || colspan="1" | [[RStudio|'''<span style="color:#4169E1">About</span>''']] || colspan="1" | [[RStudio:Use|'''<span style="color:#4F94CD">Howto</span>''']]
−
| colspan="1"|[[RStudio|'''<span style="color: #4169e1;">About</span>''']]
 
−
| colspan="1"|[[RStudio:Use|'''<span style="color: #4f94cd;">Howto</span>''']]
 
 
|-
 
|-
−
||[https://app.giga.ulg.ac.be/git/ GitLab - A versioning platform]
+
| [https://app.giga.ulg.ac.be/git/ GitLab - A versioning platform] || colspan="1" | [[GitLab|'''<span style="color:#4169E1">About</span>''']] || colspan="1" | [[GitLab:Use|'''<span style="color:#4F94CD">Howto</span>''']]
−
| colspan="1"|[[GitLab|'''<span style="color: #4169e1;">About</span>''']]
 
−
| colspan="1"|[[GitLab:Use|'''<span style="color: #4f94cd;">Howto</span>''']]
 
 
|}
 
|}
 +
</center>
 +
 +
 +
===[[Grid_computing|Grid]]-based tools===
 +
<console>
 +
u227664@master01:~$ ##i##module avail
 +
 +
##b##----------------------------------------------------------------------- /cm/shared/modulefiles ------------------------------------------------------------------------
 +
5.3.1                    bowtie/2.3.3.1            elprep/2.61              gnuplot/5.0.6            lapack/gcc/64/3.5.0      perl/time-piece/1.31      scala/2.12.0
 +
bam-readcount/1          bwa/0.7.15                elprep/3.0                go/1.9                    mothur/1.39.1            picard-tools/1.78        seqff/1
 +
basespace-invaders/1.0.0  bwa/0.7.16a              elprep/3.01              hdf5/1.6.10              nanonet/1                picard-tools/2.7.1        singularity/2.2.1
 +
basespace-python/1.0.0    bwa/0.7.5a                emboss/6.6.0              hdf5_18/1.8.14            ncbi/eutils/2016-11-22    puppet/3.7.5              slurm/14.11.11
 +
bcftools/1.3.1            canu/1.4                  ensembl-tools/86          homer/4.9                netperf/2.6.0            R/3.2.2                  snpeff/4
 +
bcl2fastq/2.17            cellranger/1.3.1          excelcompare/0.6.1        hpl/2.1                  openblas/dynamic/0.2.14  R/3.2.4                  star/2.5.2b
 +
beagle/21jan17            cmgui/7.1                fastqc/0.11.5            htseq/0.6.1p1            openlava/3.0              rdp-classifier/2.6        sun-jre/7
 +
beagle/3.3.2              crispresso/1              fastx_toolkit/0.0.13      htslib/1.3.2              openmpi/gcc/64/1.8.5      rdptools/1                tabix/0.2.6
 +
bedtools/2.17.0          cufflinks/2.2.1          flash/1.2.11              igvtools/2.3.78          pandoc/1.16.0.2          rmats/3.2.5              tophat/2.1.1
 +
blas/gcc/64/3.5.0        cutadapt/1.11            gatk/3.1.1                iozone/3_430              penncnv/1.0.3            sambamba/0.6.6            ucsc/utils/v432
 +
blast/2.5.0+              default-environment      gatk/3.6                  iozone/3_471              perl/5.16.3              samstat/1.5.1            vcfsorter/1
 +
blat/35                  dos2unix/7.1              gdb/7.9                  java/7.0.25              perl/5.24.1              samtools/0.1.19          vcftools/1
 +
bonnie++/1.97.1          EasyBuild                genomicsimla/1.1.3        java/8.0.111              perl/config-simple/4.59  samtools/1.3.1            vep/90
 +
bowtie/1.1.2              ea-utils/27              GNUparallel/20160822      jdk/jdk1.8.0_66          perl/test-simple/1,001014 samtools/1.6              zlib/1.2.8
 +
</console>
 +
 +
  
  

Revision as of 12:48, 12 November 2017

For further informations, please contact :

GIGA UDI Med
GIGA +1, Room 1/11A-B

laurent.fournier@uliege.be
Work: +32 4 366 34 53
Mobile: +32 497 87 96 46

CHU +0

udi.med@uliege.be
+32 4 366 99 66
Requests form

  • Linux support & management
  • MassStorage + grids's support & management
  • Taping system (backup)
  • Support & installs grid Linux-based
  • Desk Support & management
  • Network (LAN, VPN)
  • VPS
  • Support & installs office Windows/Mac-based
And, of course, you still got the ULg Intranet for all administrative requests and the GIGA Intranet providing much more informations.



What we got right now

Web-based tools

This Wiki - Information board About
OpenAtrium - A Project Manager for Usergroups, tasks and logistics management About Howto
Galaxy - A bioinformatics research platform About Howto
Cytomine - A collaborative imaging analysis platform About Howto
RStudio - A web IDE for R About Howto
GitLab - A versioning platform About Howto


Grid-based tools

u227664@master01:~$ module avail

----------------------------------------------------------------------- /cm/shared/modulefiles ------------------------------------------------------------------------
5.3.1                     bowtie/2.3.3.1            elprep/2.61               gnuplot/5.0.6             lapack/gcc/64/3.5.0       perl/time-piece/1.31      scala/2.12.0
bam-readcount/1           bwa/0.7.15                elprep/3.0                go/1.9                    mothur/1.39.1             picard-tools/1.78         seqff/1
basespace-invaders/1.0.0  bwa/0.7.16a               elprep/3.01               hdf5/1.6.10               nanonet/1                 picard-tools/2.7.1        singularity/2.2.1
basespace-python/1.0.0    bwa/0.7.5a                emboss/6.6.0              hdf5_18/1.8.14            ncbi/eutils/2016-11-22    puppet/3.7.5              slurm/14.11.11
bcftools/1.3.1            canu/1.4                  ensembl-tools/86          homer/4.9                 netperf/2.6.0             R/3.2.2                   snpeff/4
bcl2fastq/2.17            cellranger/1.3.1          excelcompare/0.6.1        hpl/2.1                   openblas/dynamic/0.2.14   R/3.2.4                   star/2.5.2b
beagle/21jan17            cmgui/7.1                 fastqc/0.11.5             htseq/0.6.1p1             openlava/3.0              rdp-classifier/2.6        sun-jre/7
beagle/3.3.2              crispresso/1              fastx_toolkit/0.0.13      htslib/1.3.2              openmpi/gcc/64/1.8.5      rdptools/1                tabix/0.2.6
bedtools/2.17.0           cufflinks/2.2.1           flash/1.2.11              igvtools/2.3.78           pandoc/1.16.0.2           rmats/3.2.5               tophat/2.1.1
blas/gcc/64/3.5.0         cutadapt/1.11             gatk/3.1.1                iozone/3_430              penncnv/1.0.3             sambamba/0.6.6            ucsc/utils/v432
blast/2.5.0+              default-environment       gatk/3.6                  iozone/3_471              perl/5.16.3               samstat/1.5.1             vcfsorter/1
blat/35                   dos2unix/7.1              gdb/7.9                   java/7.0.25               perl/5.24.1               samtools/0.1.19           vcftools/1
bonnie++/1.97.1           EasyBuild                 genomicsimla/1.1.3        java/8.0.111              perl/config-simple/4.59   samtools/1.3.1            vep/90
bowtie/1.1.2              ea-utils/27               GNUparallel/20160822      jdk/jdk1.8.0_66           perl/test-simple/1,001014 samtools/1.6              zlib/1.2.8



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